Pilot jets often get clogged when a bike sits with fuel in the carb(s). If you're not sure that you got the pilot jets cleaned when you went thru the carb I would double check them. The pilot jet orifice is very small (that's why it's the most likely to clog). It takes a very small wire to clean it. Amazon has wire cleaning sets that are inexpensive. I've even removed a wire from a wire brush and used that to clean pilot jets. In the worst case you can just replace them.
Could also be a bad CV diaphragm You can inspect it to se if there are any cracks or watch the slide with the engine running. When you crack the throttle the slide should lift. If it doesn't the diaphragm may be bad.